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File structure

.htaccess handles url rewrite

bak folder: backup of site, files created by Special:Backup

api.php has all includes, can be used as entry point for other PHP code on site

index.php main entry point to handle http requests

inc folder folder: all code, can be saved with Special:Snapshot and be updated with Special:Update

site folder folder: site-specific, contains site specific configuration, functions and all data.